Stem-loop tca-mir-31

Accession

MI0008904

Description

Tribolium castaneum tca-mir-31 precursor miRNA

Literature search

3 open access papers mention tca-mir-31
(6 sentences)

Sequence

3278877 reads, 22374.0 reads per million, 34 experiments

gaggcagagcAGGCAAGAUGUCGGCAUAGCUGAagguguuugaaacGGCUAUGUCUCAUCCGGCCaacuuaagccuu
(((((.(((..(((..((((..((((((((((.............)))))))))).))))..)))..)))..)))))

Structure

     -a   cA   AA    UC          Aaggu 
gaggc  gag  GGC  GAUG  GGCAUAGCUG     g
|||||  |||  |||  ||||  ||||||||||     u
uuccg  uuc  CCG  CUAC  CUGUAUCGGc     u
     aa   aa   GC    -U          aaagu 

Annotation confidence Medium

Genome context

ref|NC_007422.5|: 5938419-5938495 [+]

Mature tca-miR-31-5p

• Accession: MIMAT0008362
• Description: Tribolium castaneum tca-miR-31-5p mature miRNA
• Sequence: 11 - AGGCAAGAUGUCGGCAUAGCUGA - 33
• Evidence: experimental ; SOLID [2]

Mature tca-miR-31-3p

• Accession: MIMAT0019106
• Description: Tribolium castaneum tca-miR-31-3p mature miRNA
• Sequence: 47 - GGCUAUGUCUCAUCCGGCC - 65
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696