Stem-loop tca-mir-3881

Accession

MI0016377

Description

Tribolium castaneum tca-mir-3881 precursor miRNA

Sequence

937 reads, 76.0 reads per million, 29 experiments

acgcagacucuUCGAGUUUAAAUUAUGUUGAGUCUUuccgauagcgaucuuUGCUUUAGGGAUCUUUAAUUUCUcggaugucuuuuc
....((((..((((((...((((((....(((...((((...(((((...)))))...)))).))))))))))))))).))))....

Structure

acgc    uc      UUU      UGUU   UCU    gau     u 
    agac  uUCGAG   AAAUUA    GAG   Uucc   agcga  
    ||||  ||||||   ||||||    |||   ||||   ||||| c
    ucug  aggcUC   UUUAAU    UUC   AGGG   UCGUu  
cuuu    -u      ---      ----   --U    AUU     u 

Annotation confidence Medium

Genome context

ref|NW_015451025.1|: 124011-124097 [-]

Mature tca-miR-3881-5p

• Accession: MIMAT0018858
• Description: Tribolium castaneum tca-miR-3881-5p mature miRNA
• Sequence: 12 - UCGAGUUUAAAUUAUGUUGAGUCUU - 36
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3881-3p

• Accession: MIMAT0018859
• Description: Tribolium castaneum tca-miR-3881-3p mature miRNA
• Sequence: 52 - UGCUUUAGGGAUCUUUAAUUUCU - 74
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696