Stem-loop tca-mir-2-3

Accession

MI0008893

Description

Tribolium castaneum tca-mir-2-3 precursor miRNA

Literature search

3 open access papers mention tca-mir-2-3
(10 sentences)

Sequence

517778 reads, 8067.0 reads per million, 34 experiments

agucuugucugucCUUAUCAGAGUUGGCGGUUUUAgauuaacugauucuaUCACAGCCAGCUUUGAUGAGcacaguugagauu
.(((((..((((.(((((((((((((((.((..((((.........))))..)).))))))))))))))).))))..))))).

Structure

a     gu    c               G  UU    uua 
 gucuu  cugu CUUAUCAGAGUUGGC GU  UAga   a
 |||||  |||| ||||||||||||||| ||  ||||   c
 uagag  gaca GAGUAGUUUCGACCG CA  aucu   u
u     uu    c               A  CU    uag 

Annotation confidence High

Genome context

ref|NC_007418.3|: 560819-560901 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-2-3

Mature tca-miR-2-3-5p

• Accession: MIMAT0019093
• Description: Tribolium castaneum tca-miR-2-3-5p mature miRNA
• Sequence: 14 - CUUAUCAGAGUUGGCGGUUUUA - 35
• Evidence: experimental ; SOLID [2]

Mature tca-miR-2-3p

• Accession: MIMAT0008353
• Description: Tribolium castaneum tca-miR-2-3p mature miRNA
• Sequence: 51 - UCACAGCCAGCUUUGAUGAG - 70
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696