Stem-loop tca-mir-3849

Accession

MI0016323

Description

Tribolium castaneum tca-mir-3849 precursor miRNA

Sequence

1284 reads, 33.0 reads per million, 27 experiments

guaacuguucgaaaugcUGACAUUUUAACCAUAGUGCUGUUGuuuauauucaaauuaauAGCAUUGUGUUGGAAAUGUCGUCUuuucgaacaaacua
.....(((((((((.(.(((((((((...((((((((((((((((......))).)))))))))))))...))))))))).).))))))))).....

Structure

guaac         u c         AAC             -   au 
     uguucgaaa g UGACAUUUU   CAUAGUGCUGUUG uuu  a
     ||||||||| | |||||||||   ||||||||||||| |||   
     acaagcuuu C GCUGUAAAG   GUGUUACGAuaau aaa  u
aucaa         U U         GUU             u   cu 

Annotation confidence High

Genome context

ref|NC_007420.3|: 5505629-5505725 [+]

Mature tca-miR-3849-5p

• Accession: MIMAT0018752
• Description: Tribolium castaneum tca-miR-3849-5p mature miRNA
• Sequence: 18 - UGACAUUUUAACCAUAGUGCUGUUG - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3849-3p

• Accession: MIMAT0018753
• Description: Tribolium castaneum tca-miR-3849-3p mature miRNA
• Sequence: 60 - AGCAUUGUGUUGGAAAUGUCGUCU - 83
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696