Stem-loop tca-mir-282

Accession

MI0008926

Description

Tribolium castaneum tca-mir-282 precursor miRNA

Sequence

897 reads, 49.0 reads per million, 26 experiments

uguagaggUAGCCUCUCCUAGGCUUUGUcugugaauuuggccgagACAUAGCCUGAUUGAGGCUAAcuuuagc
..(((((.(((((((...((((((.(((((.((........))))))).))))))...))))))).)))))..

Structure

ug     g       UCC      U     g  aau 
  uagag UAGCCUC   UAGGCU UGUcu ug   u
  ||||| |||||||   |||||| ||||| ||    
  auuuc AUCGGAG   GUCCGA ACAga gc   u
cg     A       UUA      U     -  cgg 

Annotation confidence High

Genome context

ref|NC_007422.5|: 12681802-12681874 [-]

Mature tca-miR-282-5p

• Accession: MIMAT0008386
• Description: Tribolium castaneum tca-miR-282-5p mature miRNA
• Sequence: 9 - UAGCCUCUCCUAGGCUUUGU - 28
• Evidence: experimental ; SOLID [2]

Mature tca-miR-282-3p

• Accession: MIMAT0019126
• Description: Tribolium castaneum tca-miR-282-3p mature miRNA
• Sequence: 46 - ACAUAGCCUGAUUGAGGCUAA - 66
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696