Stem-loop tca-mir-6015

Accession

MI0020226

Description

Tribolium castaneum tca-mir-6015 precursor miRNA

Sequence

cuuuucgucauuuaauaaucgcgauuGGCACACCUGCCGCUCCAAuauucagaaauauAGGCAGAUGCAGCGCCGGUuguggugaugugugu
.....((((((........((((((((((....((((..((((.(((((....))))).)).))..)))).)))))))))))))))).....

Structure

cuuuu      uuaauaau          ACAC    CG  -  A     c 
     cgucau        cgcgauuGGC    CUGC  CU CC Auauu a
     ||||||        ||||||||||    ||||  || || |||||  
     guagug        guguUGGCCG    GACG  GA GG uauaa g
ugugu      --------          ---C    UA  C  A     a 

Annotation confidence Not enough data

Genome context

ChLG4: 10702478-10702569 [-]

Mature tca-miR-6015-5p

• Accession: MIMAT0023571
• Description: Tribolium castaneum tca-miR-6015-5p mature miRNA
• Sequence: 27 - GGCACACCUGCCGCUCCAA - 45
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6015-3p

• Accession: MIMAT0023572
• Description: Tribolium castaneum tca-miR-6015-3p mature miRNA
• Sequence: 59 - AGGCAGAUGCAGCGCCGGU - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323