Stem-loop tca-mir-2765

Accession

MI0016261

Description

Tribolium castaneum tca-mir-2765 precursor miRNA

Literature search

1 open access papers mention tca-mir-2765
(2 sentences)

Sequence

557727 reads, 2852.0 reads per million, 34 experiments

aaaaguaccgaaauucuuggauauagugaggagUGGUAACUCCACCACCGUUGGCguguguuguacugcCAGCGGUCGAGGAGUUCCUUAAccucgcuguaauucuccaaaggacaagguaaguug
.....((((....((((((((((((((((((...((.((((((.(.((((((((((.(((...))))))))))))).).))))))))....))))))))))....))).)))))...)))).....

Structure

aaaag    gaaa     -   ----          -agU  U      A C          u   u 
     uacc    uucuu gga    uauagugagg    GG AACUCC C ACCGUUGGCg gug  
     ||||    ||||| |||    ||||||||||    || |||||| | |||||||||| ||| u
     augg    aggaa ccu    augucgcucc    CC UUGAGG G UGGCGACcgu cau  
guuga    -aac     a   cuua          AAUU  -      A C          -   g 

Annotation confidence High

Genome context

ref|NC_007425.3|: 4187781-4187906 [-]

Mature tca-miR-2765-5p

• Accession: MIMAT0018630
• Description: Tribolium castaneum tca-miR-2765-5p mature miRNA
• Sequence: 34 - UGGUAACUCCACCACCGUUGGC - 55
• Evidence: experimental ; SOLID [1]

Mature tca-miR-2765-3p

• Accession: MIMAT0018631
• Description: Tribolium castaneum tca-miR-2765-3p mature miRNA
• Sequence: 70 - CAGCGGUCGAGGAGUUCCUUAA - 91
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696