Stem-loop tca-mir-6018

Accession

MI0020229

Description

Tribolium castaneum tca-mir-6018 precursor miRNA

Sequence

aaacaaugguaggcagCUAGUUUCAAUGGAAUUAAuaauuuuuuuaaaaaacaaUAGAAUUCAACUUGUGACUAGucgacccuaccaucucca
.....((((((((..(((((((.(((..(((((......((((....))))......)))))...))).)))))))....)))))))).....

Structure

aaaca        --ca       U   -UG     AAuaau    u 
     augguagg    gCUAGUU CAA   GAAUU      uuuu u
     ||||||||    ||||||| |||   |||||      ||||  
     uaccaucc    uGAUCAG GUU   CUUAA      aaaa a
accuc        cagc       U   CAA     GAUaac    a 

Annotation confidence Low

Genome context

ChLG8: 362657-362749 [-]

Mature tca-miR-6018-5p

• Accession: MIMAT0023577
• Description: Tribolium castaneum tca-miR-6018-5p mature miRNA
• Sequence: 17 - CUAGUUUCAAUGGAAUUAA - 35
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6018-3p

• Accession: MIMAT0023578
• Description: Tribolium castaneum tca-miR-6018-3p mature miRNA
• Sequence: 55 - UAGAAUUCAACUUGUGACUAG - 75
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323