miRBase entry: tca-mir-3869

Stem-loop tca-mir-3869


Accession
MI0016363
Description
Tribolium castaneum tca-mir-3869 precursor miRNA


Sequence

uaauuACUGAUAGAUGGUCUCGAAAAGCCuuauagcgauguugggggCAUUCGAGACCCCUGUUAGUUACcu
.....((((((((..(((((((((..((((..((((...)))).)))).))))))))).)))))))).....

Structure
uaauu        AU         AA    ua    g 
     ACUGAUAG  GGUCUCGAA  GCCu  uagc  
     ||||||||  |||||||||  ||||  |||| a
     UGAUUGUC  CCAGAGCUU  Cggg  guug  
ucCAU        -C         -A    -g    u 


Annotation confidence Not enough data
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Genome context
ChLG5: 14293317-14293388 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-3869
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3869-5p

Accession MIMAT0018830
Description Tribolium castaneum tca-miR-3869-5p mature miRNA
Sequence 6 - ACUGAUAGAUGGUCUCGAAAAGCC - 29
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3869-3p

Accession MIMAT0018831
Description Tribolium castaneum tca-miR-3869-3p mature miRNA
Sequence 48 - CAUUCGAGACCCCUGUUAGUUAC - 70
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696