Stem-loop tca-mir-3869

Accession

MI0016363

Description

Tribolium castaneum tca-mir-3869 precursor miRNA

Sequence

1321303 reads, 9187.0 reads per million, 34 experiments

uaauuACUGAUAGAUGGUCUCGAAAAGCcuuauagcgauguugggggCAUUCGAGACCCCUGUUAGUUAccu
.....((((((((..(((((((((..((((..((((...)))).)))).))))))))).)))))))).....

Structure

uaauu        AU         AA    ua    g 
     ACUGAUAG  GGUCUCGAA  GCcu  uagc  
     ||||||||  |||||||||  ||||  |||| a
     UGAUUGUC  CCAGAGCUU  Cggg  guug  
uccAU        -C         -A    -g    u 

Annotation confidence High

Genome context

ref|NC_007420.3|: 14854738-14854809 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3869

Mature tca-miR-3869-5p

• Accession: MIMAT0018830
• Description: Tribolium castaneum tca-miR-3869-5p mature miRNA
• Sequence: 6 - ACUGAUAGAUGGUCUCGAAAAGC - 28
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3869-3p

• Accession: MIMAT0018831
• Description: Tribolium castaneum tca-miR-3869-3p mature miRNA
• Sequence: 48 - CAUUCGAGACCCCUGUUAGUUA - 69
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696