Stem-loop tca-mir-2-1

Accession

MI0008894

Description

Tribolium castaneum tca-mir-2-1 precursor miRNA

Literature search

3 open access papers mention tca-mir-2-1
(10 sentences)

Sequence

496645 reads, 9724.0 reads per million, 34 experiments

uuuaugugcugugucgCUCAUCAACUGGAUGUGAAAUGgauuuguagcucaUAUCACAGCCAGCUUUGAUGAGCGcuacaacaucuaa
.....(((.((((.((((((((((((((.(((((.((((.........)))).))))).))))..)))))))))).)))).)))....

Structure

uuuau   c    u          --    A     A    auu 
     gug ugug cgCUCAUCAA  CUGG UGUGA AUGg   u
     ||| |||| ||||||||||  |||| ||||| ||||   g
     uac acau GCGAGUAGUU  GACC ACACU Uacu   u
-aauc   a    c          UC    G     A    cga 

Annotation confidence High

Genome context

ref|NC_007418.3|: 561184-561271 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-2-1

Mature tca-miR-2-1-5p

• Accession: MIMAT0019094
• Description: Tribolium castaneum tca-miR-2-1-5p mature miRNA
• Sequence: 17 - CUCAUCAACUGGAUGUGAAAUG - 38
• Evidence: experimental ; SOLID [2]

Mature tca-miR-2-3p

• Accession: MIMAT0008353
• Description: Tribolium castaneum tca-miR-2-3p mature miRNA
• Sequence: 52 - UAUCACAGCCAGCUUUGAUGAGCG - 75
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696