Stem-loop tca-mir-12

Accession

MI0008900

Description

Tribolium castaneum tca-mir-12 precursor miRNA

Literature search

1 open access papers mention tca-mir-12
(1 sentences)

Sequence

uaaaaguucaggguuUGAGUAUUACAUCAGGUACUGguucgguuuugaaaaacCGGUCCCUGAGUAACACUUACAuucuggcuuuua
(((((((.((((((.(((((.((((.(((((.(((((((...........))))))).))))))))).))))).)))))))))))))

Structure

       u      u     A    A     U       cggu 
uaaaagu cagggu UGAGU UUAC UCAGG ACUGguu    u
||||||| |||||| ||||| |||| ||||| |||||||    u
auuuucg gucuuA AUUCA AAUG AGUCC UGGCcaa    u
       -      C     C    -     C       aaag 

Annotation confidence Not enough data

Genome context

ChLG3: 19663493-19663579 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-12

Mature tca-miR-12-5p

• Accession: MIMAT0008358
• Description: Tribolium castaneum tca-miR-12-5p mature miRNA
• Sequence: 16 - UGAGUAUUACAUCAGGUACUG - 36
• Evidence: experimental ; SOLID [2]

Mature tca-miR-12-3p

• Accession: MIMAT0019102
• Description: Tribolium castaneum tca-miR-12-3p mature miRNA
• Sequence: 54 - CGGUCCCUGAGUAACACUUACA - 75
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696