Stem-loop tca-mir-3844

Accession

MI0016314

Description

Tribolium castaneum tca-mir-3844 precursor miRNA

Sequence

656 reads, 34.0 reads per million, 23 experiments

auuuauguuuugagAGGCACCUCAGAAAACCCCACGCacauguuuguacaaauugugugugauaaaauGAGGUGCCAGAGCAAAUUG
.....((((((....(((((((((........(((((((((((....)))...))))))))......))))))))))))))).....

Structure

auuua      gagA         GAAAACCC        ---   u 
     uguuuu    GGCACCUCA        CACGCaca   ugu u
     ||||||    |||||||||        ||||||||   |||  
     ACGAGA    CCGUGGAGu        gugugugu   aca g
GUUAA      ----         --aaaaua        uaa   u 

Annotation confidence Low

Genome context

ref|NC_007418.3|: 6042488-6042574 [-]

Mature tca-miR-3844-5p

• Accession: MIMAT0018734
• Description: Tribolium castaneum tca-miR-3844-5p mature miRNA
• Sequence: 15 - AGGCACCUCAGAAAACCCCACGC - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3844-3p

• Accession: MIMAT0018735
• Description: Tribolium castaneum tca-miR-3844-3p mature miRNA
• Sequence: 69 - GAGGUGCCAGAGCAAAUUG - 87
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696