Stem-loop tca-mir-929

Accession

MI0008934

Description

Tribolium castaneum tca-mir-929 precursor miRNA

Sequence

4750 reads, 38.0 reads per million, 28 experiments

agacggccaucuuaaucggggucAAAUUGACUCUAGUAGGGAGUccguuacuuuauagcgaCUCCCUAACGGAGUCAGGUUGacucccuuugagggaaaucua
(((...((..(((((..((((((((.((((((((..(((((((((.((((.....)))))))))))))..)))))))).))))))))..)))))))...))).

Structure

-   cgg  au     uc        A        AG         c    c 
 aga   cc  cuuaa  ggggucAA UUGACUCU  UAGGGAGUc guua u
 |||   ||  |||||  |||||||| ||||||||  ||||||||| |||| u
 ucu   gg  gaguu  ccucaGUU GACUGAGG  AUCCCUCag cgau u
a   aaa  --     uc        G        CA         -    a 

Annotation confidence Medium

Genome context

ref|NC_007424.3|: 8050326-8050428 [+]

Mature tca-miR-929-5p

• Accession: MIMAT0008395
• Description: Tribolium castaneum tca-miR-929-5p mature miRNA
• Sequence: 24 - AAAUUGACUCUAGUAGGGAGU - 44
• Evidence: experimental ; SOLID [2]

Mature tca-miR-929-3p

• Accession: MIMAT0019133
• Description: Tribolium castaneum tca-miR-929-3p mature miRNA
• Sequence: 62 - CUCCCUAACGGAGUCAGGUUG - 82
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18571123
   Genome-wide mapping of conserved microRNAs and their host transcripts in Tribolium castaneum
   "Luo Q, Zhou Q, Yu X, Lin H, Hu S, Yu J"
   "J Genet Genomics (2008) 35:349-355


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696