Stem-loop tca-mir-375

Accession

MI0016345

Description

Tribolium castaneum tca-mir-375 precursor miRNA

Literature search

2 open access papers mention tca-mir-375
(4 sentences)

Sequence

249618 reads, 1480.0 reads per million, 34 experiments

ucaaacugACUUGAGCCUUGCGAAUAAUUCcuaauuuaaagagcgaUUUGUUCGUGUGGCUCGAGUUAgauaaa
.....((((((((((((..((((((((.((((.........)).)).))))))))..)))))))))))).....

Structure

ucaaa            UU        U  -  aau 
     cugACUUGAGCC  GCGAAUAA UC cu   u
     ||||||||||||  |||||||| || ||   u
     gAUUGAGCUCGG  UGCUUGUU ag ga   a
aaaua            UG        U  c  gaa 

Annotation confidence High

Genome context

ref|NC_007423.3|: 13678586-13678659 [-]

Mature tca-miR-375-5p

• Accession: MIMAT0018794
• Description: Tribolium castaneum tca-miR-375-5p mature miRNA
• Sequence: 9 - ACUUGAGCCUUGCGAAUAAUUC - 30
• Evidence: experimental ; SOLID [1]

Mature tca-miR-375-3p

• Accession: MIMAT0018795
• Description: Tribolium castaneum tca-miR-375-3p mature miRNA
• Sequence: 47 - UUUGUUCGUGUGGCUCGAGUUA - 68
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696