Stem-loop tca-mir-6008

Accession

MI0020219

Description

Tribolium castaneum tca-mir-6008 precursor miRNA

Sequence

guauuuagcugGACUGCUGGUGUCAUGUAUUcgacucuuuucaccaugccguaccuccuagucgcccAUUACCACGCUAGCGGAACgguuguuacu
(((..((((((..((((((((((...(((..(((((......((......)).......))))).....))).))))))))))..)))))).))).

Structure

-   uu      GA          CAU   ---UU     -cuuuuc  ca 
 gua  uagcug  CUGCUGGUGU   GUA     cgacu       ac  u
 |||  ||||||  ||||||||||   |||     |||||       ||   
 cau  guuggC  GGCGAUCGCA   CAU     gcuga       ug  g
u   -u      AA          --C   UAccc     uccucca  cc 

Annotation confidence Not enough data

Genome context

ChLG2: 11714883-11714978 [+]

Mature tca-miR-6008-5p

• Accession: MIMAT0023557
• Description: Tribolium castaneum tca-miR-6008-5p mature miRNA
• Sequence: 12 - GACUGCUGGUGUCAUGUAUU - 31
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6008-3p

• Accession: MIMAT0023558
• Description: Tribolium castaneum tca-miR-6008-3p mature miRNA
• Sequence: 68 - AUUACCACGCUAGCGGAAC - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323