Stem-loop tca-mir-6017

Accession

MI0020228

Description

Tribolium castaneum tca-mir-6017 precursor miRNA

Sequence

auaagaguuuguuguuuccacccugucguguuccuaaUUGGUAUGUUGUAUUUUUUAuugggcugauucguguuuacgaugagucuuccuguauccaagccgaguGCCUCUAAUCAAUUCCAAUUagucggaugacacggacaauuuacuggucu
.....(((..(((((.....((.((((((.(..((((((((...((((.......((((.(((((((((((.......)))))))............)))).))))........)))).))))))))..).)))))).)))))))..))).....

Structure

auaag   uu     uucca  c      g uc        UAU    -UAUUUUU    g    ------------       gu 
     agu  guugu     cc ugucgu u  cuaaUUGG   GUUG        UAuu ggcu            gauucgu  u
     |||  |||||     || |||||| |  ||||||||   ||||        |||| ||||            |||||||  u
     uca  uaaca     gg acagua g  gaUUAACC   UAAC        Guga ccga            cugagua  a
ucugg   uu     -----  c      g cu        --U    UAAUCUCC    g    accuauguccuu       gc 

Annotation confidence Low

Genome context

ChLG7: 6907635-6907789 [-]

Mature tca-miR-6017-5p

• Accession: MIMAT0023575
• Description: Tribolium castaneum tca-miR-6017-5p mature miRNA
• Sequence: 38 - UUGGUAUGUUGUAUUUUUUA - 57
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6017-3p

• Accession: MIMAT0023576
• Description: Tribolium castaneum tca-miR-6017-3p mature miRNA
• Sequence: 106 - GCCUCUAAUCAAUUCCAAUU - 125
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323