Stem-loop tca-mir-2-2

Accession

MI0008895

Description

Tribolium castaneum tca-mir-2-2 precursor miRNA

Literature search

3 open access papers mention tca-mir-2-2
(10 sentences)

Sequence

484637 reads, 9237.0 reads per million, 34 experiments

gguguaggcuuucGCUCAUCAUCUGGUUGUGAAAUGugaauuuauaucaUAUCACAGCCAGCUUUGAUGAGCGcaagagugcacu
((((((..(((.(((((((((.((((((((((..(((((.......)))))))))))))))...))))))))).)))..))))))

Structure

      gg   u         --U          AA     au 
ggugua  cuu cGCUCAUCA   CUGGUUGUGA  UGuga  u
||||||  ||| |||||||||   ||||||||||  |||||  u
ucacgu  gaa GCGAGUAGU   GACCGACACU  AUacu  a
      ga   c         UUC          --     au 

Annotation confidence High

Genome context

ref|NC_007418.3|: 561337-561421 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-2-2

Mature tca-miR-2-2-5p

• Accession: MIMAT0019096
• Description: Tribolium castaneum tca-miR-2-2-5p mature miRNA
• Sequence: 14 - GCUCAUCAUCUGGUUGUGAAAUG - 36
• Evidence: experimental ; SOLID [2]

Mature tca-miR-2-3p

• Accession: MIMAT0008353
• Description: Tribolium castaneum tca-miR-2-3p mature miRNA
• Sequence: 50 - UAUCACAGCCAGCUUUGAUGAGCG - 73
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696