Stem-loop tca-mir-7

Accession

MI0008897

Description

Tribolium castaneum tca-mir-7 precursor miRNA

Literature search

2 open access papers mention tca-mir-7
(11 sentences)

Sequence

969044 reads, 5915.0 reads per million, 32 experiments

ugguguugugUGGAAGACUAGUGAUUUUGUUGUUcuaauuuuuacguaaCAAGGAAUCACUAAUCAUCCCACaaagcc
.(((.(((((.(((.((.(((((((((..((((((..........).))))).))))))))).)).)))))))).)))

Structure

u   g     U   A  C         UG     - uaau 
 ggu uugug GGA GA UAGUGAUUU  UUGUU c    u
 ||| ||||| ||| || |||||||||  ||||| |     
 ccg aaCAC CCU CU AUCACUAAG  AACaa g    u
-   a     -   A  A         -G     u cauu 

Annotation confidence High

Genome context

ref|NC_007422.5|: 1856514-1856591 [+]

Mature tca-miR-7-5p

• Accession: MIMAT0008355
• Description: Tribolium castaneum tca-miR-7-5p mature miRNA
• Sequence: 11 - UGGAAGACUAGUGAUUUUGUUGUU - 34
• Evidence: experimental ; SOLID [2]

Mature tca-miR-7-3p

• Accession: MIMAT0019099
• Description: Tribolium castaneum tca-miR-7-3p mature miRNA
• Sequence: 50 - CAAGGAAUCACUAAUCAUCCCAC - 72
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696