Stem-loop tca-mir-281

Accession

MI0008925

Description

Tribolium castaneum tca-mir-281 precursor miRNA

Literature search

5 open access papers mention tca-mir-281
(7 sentences)

Sequence

4140118 reads, 26683.0 reads per million, 34 experiments

ucgaaaaugAAGAGAGCUAUCCGUCGACAGUAuauaauuuacaCUGUCAUGGAGUUGCUCUCUUuau
......(((((((((((..(((((.((((((.((.....)).)))))))))))...)))))))))))

Structure

ucgaaa           -UA     C      A  u 
      augAAGAGAGC   UCCGU GACAGU ua a
      |||||||||||   ||||| |||||| || a
      uauUUCUCUCG   AGGUA CUGUCa au u
------           UUG     -      c  u 

Annotation confidence High

Genome context

ref|NC_007422.5|: 203919-203985 [+]

Mature tca-miR-281-5p

• Accession: MIMAT0008384
• Description: Tribolium castaneum tca-miR-281-5p mature miRNA
• Sequence: 10 - AAGAGAGCUAUCCGUCGACAGUA - 32
• Evidence: experimental ; SOLID [2]

Mature tca-miR-281-3p

• Accession: MIMAT0008385
• Description: Tribolium castaneum tca-miR-281-3p mature miRNA
• Sequence: 44 - CUGUCAUGGAGUUGCUCUCUU - 64
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696