miRBase entry: tca-mir-3811a-5

Stem-loop tca-mir-3811a-5


Accession
MI0016279
Description
Tribolium castaneum tca-mir-3811a-5 precursor miRNA


Sequence

uuuauccaauucucaggaUUCUUGCUCAGGGUUUACuaaauaugaaaUAUGUACAACCGUGAGUGGAGACCugaggguuggucagu
.....((((((((((((.((((.(((((.(((((((..............))).)))).))))))))).)))))))))))).....

Structure
uuuau            a    U     G    -   uaaaua 
     ccaauucucagg UUCU GCUCA GGUU UAC      u
     |||||||||||| |||| ||||| |||| |||       
     gguugggaguCC GAGG UGAGU CCAA AUG      g
ugacu            A    -     G    C   UAUaaa 


Annotation confidence Not enough data
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Genome context
ChLGX: 5785317-5785402 [-]
Clustered miRNAs
31 other miRNAs are < 10 kb from tca-mir-3811a-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3811a-3p

Accession MIMAT0018645
Description Tribolium castaneum tca-miR-3811a-3p mature miRNA
Sequence 48 - UAUGUACAACCGUGAGUGGAGACC - 71
Evidence experimental
SOLID [1]

Mature tca-miR-3811a-5-5p

Accession MIMAT0018676
Description Tribolium castaneum tca-miR-3811a-5-5p mature miRNA
Sequence 19 - UUCUUGCUCAGGGUUUAC - 36
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696