miRBase entry: tca-mir-3804a

Stem-loop tca-mir-3804a


Accession
MI0016258
Description
Tribolium castaneum tca-mir-3804a precursor miRNA


Sequence

auauuuuuUGGCACACAUCAAUGUCCACGUUUUUgugacuugauucgcugaaAUGUUCCAUAAGUGUGCUAGAACaacc
.....(((((((((((....(((...(((((((.((((......)))).)))))))..)))..))))))))))).....

Structure
auauu           AUCA   UCC       U    cu 
     uuuUGGCACAC    AUG   ACGUUUU guga  u
     |||||||||||    |||   ||||||| ||||   
     AAGAUCGUGUG    UAC   UGUAaag cgcu  g
ccaaC           --AA   -CU       u    ua 


Annotation confidence Not enough data
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Genome context
ChLG10: 5147561-5147639 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-3804a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3804a-5p

Accession MIMAT0018624
Description Tribolium castaneum tca-miR-3804a-5p mature miRNA
Sequence 9 - UGGCACACAUCAAUGUCCACGUUUUU - 34
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3804a-3p

Accession MIMAT0018625
Description Tribolium castaneum tca-miR-3804a-3p mature miRNA
Sequence 53 - AUGUUCCAUAAGUGUGCUAGAAC - 75
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696