Stem-loop tca-mir-6009

Accession

MI0020220

Description

Tribolium castaneum tca-mir-6009 precursor miRNA

Sequence

cgacaguuguuuggcuucguuggCUCAAAUGUUGAGCGAGACccugacgcucuuugcGUGGGCGCUCGACGAGUCCaagugcgacaggcg
........(((((......(((((((....((((((((...(((..((((.....)))))))))))))))))).))))......))))).

Structure

cgacaguu     gcuucg    -   AAAU        AGA   ug    u 
        guuug      uugg CUC    GUUGAGCG   Ccc  acgc c
        |||||      |||| |||    ||||||||   |||  |||| u
        cggac      aaCC GAG    CAGCUCGC   GGG  UGcg u
-------g     agcgug    U   ----        ---   --    u 

Annotation confidence Low

Genome context

ChLG2: 187135-187224 [+]

Mature tca-miR-6009-5p

• Accession: MIMAT0023559
• Description: Tribolium castaneum tca-miR-6009-5p mature miRNA
• Sequence: 24 - CUCAAAUGUUGAGCGAGAC - 42
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6009-3p

• Accession: MIMAT0023560
• Description: Tribolium castaneum tca-miR-6009-3p mature miRNA
• Sequence: 58 - GUGGGCGCUCGACGAGUCC - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323