Stem-loop tca-mir-3811b

Accession

MI0016285

Description

Tribolium castaneum tca-mir-3811b precursor miRNA

Sequence

6299 reads, 38.0 reads per million, 30 experiments

auacgguuuuaacuaauucucaggaUUCUUACUUGCGGUGUACAUGUUuugguaugaauaguaaaUAUGUACAACCGUGAGUGGAGACuggggguugguuagucaacagcuu
.....((((((((((((((((((..(((..(((((((((((((((((((.............)))))))))).))))))))))))..)))))))))))))))..))).....

Structure

auacg   --               ga   UU         -          uggua 
     guu  uuaacuaauucucag  UUC  ACUUGCGGU GUACAUGUUu     u
     |||  |||||||||||||||  |||  ||||||||| ||||||||||     g
     caa  gauugguuggggguC  AGG  UGAGUGCCA CAUGUAUaaa     a
uucga   cu               AG   --         A          ugaua 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6598310-6598421 [+]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3811b

Mature tca-miR-3811b-5p

• Accession: MIMAT0018664
• Description: Tribolium castaneum tca-miR-3811b-5p mature miRNA
• Sequence: 26 - UUCUUACUUGCGGUGUACAUGUU - 48
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3811b-3p

• Accession: MIMAT0018665
• Description: Tribolium castaneum tca-miR-3811b-3p mature miRNA
• Sequence: 66 - UAUGUACAACCGUGAGUGGAGAC - 88
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696