Stem-loop tca-mir-9e

Accession

MI0020231

Description

Tribolium castaneum tca-mir-9e precursor miRNA

Literature search

1 open access papers mention tca-mir-9e
(3 sentences)

Sequence

aacagguugcaagucggauauauucuUCUUUGGUGAUCUAGUUGUAUgaguguuuuauauaucAUAAAGCUGGUUCAGCAAAGCAgauugcauucgacucuucgacgagcc
.....((((..((((((((.((.(((.(((((.(((.((((((.(((((.(((.....)))))))).)))))).))).))))).))).)).))))))))...)))).....

Structure

aacag    -ca        a  u   U     G   U      G     g   u 
     guug   agucggau ua ucu CUUUG UGA CUAGUU UAUga ugu u
     ||||   |||||||| || ||| ||||| ||| |||||| ||||| ||| u
     cagc   ucagcuua gu agA GAAAC ACU GGUCGA AUAcu aua a
ccgag    uuc        c  u   C     G   U      A     -   u 

Annotation confidence Low

Genome context

ChLG9: 11062-11172 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-9e

Mature tca-miR-9e-5p

• Accession: MIMAT0023581
• Description: Tribolium castaneum tca-miR-9e-5p mature miRNA
• Sequence: 27 - UCUUUGGUGAUCUAGUUGUAU - 47
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-9e-3p

• Accession: MIMAT0023582
• Description: Tribolium castaneum tca-miR-9e-3p mature miRNA
• Sequence: 64 - AUAAAGCUGGUUCAGCAAAGCA - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323