Stem-loop tca-mir-210

Accession

MI0008918

Description

Tribolium castaneum tca-mir-210 precursor miRNA

Literature search

3 open access papers mention tca-mir-210
(4 sentences)

Sequence

8956 reads, 188.0 reads per million, 31 experiments

cucacugcAGCUGCUGGACGCUGCACAAGAuuagauauuuuagaacucUUGUGCGUGUGACAGCGGCUAUuguggg
(((((...((((((((.((((.(((((((((((((...)))))...))))))))))))..))))))))...)))))

Structure

     ugc        -G    U        ---     u 
cucac   AGCUGCUG  ACGC GCACAAGA   uuaga  
|||||   ||||||||  |||| ||||||||   ||||| a
gggug   UCGGCGAC  UGUG CGUGUUcu   gauuu  
     uUA        AG    -        caa     u 

Annotation confidence High

Genome context

ref|NC_007419.2|: 7127331-7127406 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-210

Mature tca-miR-210-5p

• Accession: MIMAT0019120
• Description: Tribolium castaneum tca-miR-210-5p mature miRNA
• Sequence: 9 - AGCUGCUGGACGCUGCACAAGA - 30
• Evidence: experimental ; SOLID [2]

Mature tca-miR-210-3p

• Accession: MIMAT0008376
• Description: Tribolium castaneum tca-miR-210-3p mature miRNA
• Sequence: 49 - UUGUGCGUGUGACAGCGGCUAU - 70
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696