Stem-loop tca-mir-1000

Accession

MI0010591

Description

Tribolium castaneum tca-mir-1000 precursor miRNA

Sequence

acggcucggccaugAUAUUGUCCUGUCACAGCaguacugguuccgaguuaCUGCUGCUUCGGGACAUGACCAuggccgggccucuuggccgacgccgccc
..((((((((((((.(..(((((((...((((((((((.(...).)).))))))))...)))))))..).))))))))))))...((((....))))...

Structure

----------------ac            A AU       UCA        -  g u 
                  ggcucggccaug U  UGUCCUG   CAGCagua cu g  
                  |||||||||||| |  |||||||   |||||||| || | u
                  ccgggccgguAC A  ACAGGGC   GUCGUCau ga c  
cccgccgcagccgguucu            C GU       UUC        u  g c 

Annotation confidence Not enough data

Genome context

ChLG2: 1618878-1618977 [+]

Mature tca-miR-1000-5p

• Accession: MIMAT0010097
• Description: Tribolium castaneum tca-miR-1000-5p mature miRNA
• Sequence: 15 - AUAUUGUCCUGUCACAGC - 32
• Evidence: experimental ; SOLID [1]

Mature tca-miR-1000-3p

• Accession: MIMAT0019184
• Description: Tribolium castaneum tca-miR-1000-3p mature miRNA
• Sequence: 51 - CUGCUGCUUCGGGACAUGACCA - 72
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696