Stem-loop tca-mir-3853

Accession

MI0016328

Description

Tribolium castaneum tca-mir-3853 precursor miRNA

Sequence

303 reads, 6.0 reads per million, 25 experiments

uuucaugaaaaaauauccuugugcaucuuGUGUGUAUUUUGUGAAAUGCUAuaguugaauauuuuaGUUUUUUUCAAAAUAUGCUCAUaaugugcaagggugauuuguuaucggu
....((((.(((.(((((((((((((..((.((((((((((.((((.((((.(((.....))).)))).)))).)))))))))).))..))))))))))))).))).))))....

Structure

uuuc    a   a             cu  U          U    U    u   u 
    auga aaa uauccuugugcau  uG GUGUAUUUUG GAAA GCUA agu g
    |||| ||| |||||||||||||  || |||||||||| |||| |||| ||| a
    uauu uuu gugggaacgugua  AC CGUAUAAAAC UUUU UGau uua a
uggc    g   a             aU  U          U    U    u   u 

Annotation confidence Medium

Genome context

ref|NC_007420.3|: 5943296-5943410 [-]

Mature tca-miR-3853-5p

• Accession: MIMAT0018762
• Description: Tribolium castaneum tca-miR-3853-5p mature miRNA
• Sequence: 30 - GUGUGUAUUUUGUGAAAUGCUA - 51
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3853-3p

• Accession: MIMAT0018763
• Description: Tribolium castaneum tca-miR-3853-3p mature miRNA
• Sequence: 67 - GUUUUUUUCAAAAUAUGCUCAU - 88
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696