Stem-loop tca-mir-3842

Accession

MI0016311

Description

Tribolium castaneum tca-mir-3842 precursor miRNA

Sequence

550 reads, 25.0 reads per million, 33 experiments

ucccacaaccuaacaacaAGGAGGAAAAACGAGUCGGUCGgcauggcacugaugcGAACGCUUCGUUUUUAUCCUUGUuguuuuaucguugaaaau
.....((((..(((((((((((..(((((((((.((.(((.(((.......)))))).)).))))))))).))))))))))).....)))).....

Structure

uccca    ---cu           GG         U  G   g   gg 
     caac     aacaacaAGGA  AAAAACGAG CG UCG cau  c
     ||||     |||||||||||  ||||||||| || ||| |||  a
     guug     uuguUGUUCCU  UUUUUGCUU GC AGc gua  c
uaaaa    cuauu           -A         C  A   -   gu 

Annotation confidence High

Genome context

ref|NC_007418.3|: 559276-559371 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-3842

Mature tca-miR-3842-5p

• Accession: MIMAT0018728
• Description: Tribolium castaneum tca-miR-3842-5p mature miRNA
• Sequence: 19 - AGGAGGAAAAACGAGUCGGUCG - 40
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3842-3p

• Accession: MIMAT0018729
• Description: Tribolium castaneum tca-miR-3842-3p mature miRNA
• Sequence: 56 - GAACGCUUCGUUUUUAUCCUUGU - 78
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696