miRBase entry: tca-mir-965

Stem-loop tca-mir-965


Accession
MI0010589
Description
Tribolium castaneum tca-mir-965 precursor miRNA


Sequence

ggcgcgcuccgauuggacccuggGGUGGAAAGUUGUACCGCUgauggugauuuuucuacacaUAAGCGUAUAGCUUUUCCCCUUugguuccaaucacgacgauc
....((.((.(((((((.((.((((.((((((((((((.(((.(((((((....)).)).))).)))))))))))))))))))..)).)))))))..))))...

Structure
ggcg  c  -c       c  -u    U            C   g   -  -  u 
    cg uc  gauugga cc  ggGG GGAAAGUUGUAC GCU aug gu ga u
    || ||  ||||||| ||  |||| |||||||||||| ||| ||| || ||  
    gc ag  cuaaccu gg  UCCC CUUUUCGAUAUG CGA Uac ca cu u
-cua  -  ca       u  uU    -            -   A   a  u  u 


Annotation confidence Not enough data
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Genome context
ChLG5: 8033620-8033723 [+]

Database links

Mature tca-miR-965-3p

Accession MIMAT0010095
Description Tribolium castaneum tca-miR-965-3p mature miRNA
Sequence 63 - UAAGCGUAUAGCUUUUCCCCUU - 84
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-965-5p

Accession MIMAT0019183
Description Tribolium castaneum tca-miR-965-5p mature miRNA
Sequence 24 - GGUGGAAAGUUGUACCGCU - 42
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696