Stem-loop tca-mir-965

Accession

MI0010589

Description

Tribolium castaneum tca-mir-965 precursor miRNA

Literature search

2 open access papers mention tca-mir-965
(2 sentences)

Sequence

3041 reads, 113.0 reads per million, 34 experiments

ggcgcgcuccgauuggacccuggGGUGGAAAGUUGUACCGCUgauggugauuuuucuacacaUAAGCGUAUAGCUUUUCCCCUUugguuccaaucacgacgauc
....((.((.(((((((.((.((((.((((((((((((.(((.(((((((....)).)).))).)))))))))))))))))))..)).)))))))..))))...

Structure

ggcg  c  -c       c  -u    U            C   g   -  -  u 
    cg uc  gauugga cc  ggGG GGAAAGUUGUAC GCU aug gu ga u
    || ||  ||||||| ||  |||| |||||||||||| ||| ||| || ||  
    gc ag  cuaaccu gg  UCCC CUUUUCGAUAUG CGA Uac ca cu u
-cua  -  ca       u  uU    -            -   A   a  u  u 

Annotation confidence High

Genome context

ref|NC_007420.3|: 8315293-8315396 [+]

Mature tca-miR-965-5p

• Accession: MIMAT0019183
• Description: Tribolium castaneum tca-miR-965-5p mature miRNA
• Sequence: 24 - GGUGGAAAGUUGUACCGCU - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-965-3p

• Accession: MIMAT0010095
• Description: Tribolium castaneum tca-miR-965-3p mature miRNA
• Sequence: 63 - UAAGCGUAUAGCUUUUCCCCUU - 84
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696