Stem-loop tca-mir-3811a-2

Accession

MI0016268

Description

Tribolium castaneum tca-mir-3811a-2 precursor miRNA

Sequence

7411 reads, 49.0 reads per million, 32 experiments

uuuauccaauucucaggaUUCUUGCUCAGGGUUUACAUGUUuugguuuaaauaugaaaUAUGUACAACCGUGAGUGGAGACcuggagguuggucagu
.....((((((.(((((.((((.(((((.(((((((((((((((.........))))))))))).)))).))))))))).))))).)))))).....

Structure

uuuau      c     a    U     G    -           guu 
     ccaauu ucagg UUCU GCUCA GGUU UACAUGUUuug   u
     |||||| ||||| |||| ||||| |||| |||||||||||   a
     gguugg ggucC GAGG UGAGU CCAA AUGUAUaaagu   a
ugacu      a     A    -     G    C           aua 

Annotation confidence High

Genome context

ref|NC_007416.3|: 6597080-6597176 [+]

Clustered miRNAs

31 other miRNAs are < 10 kb from tca-mir-3811a-2

Mature tca-miR-3811a-5p

• Accession: MIMAT0018644
• Description: Tribolium castaneum tca-miR-3811a-5p mature miRNA
• Sequence: 19 - UUCUUGCUCAGGGUUUACAUGUU - 41
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3811a-3p

• Accession: MIMAT0018645
• Description: Tribolium castaneum tca-miR-3811a-3p mature miRNA
• Sequence: 59 - UAUGUACAACCGUGAGUGGAGAC - 81
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696