Stem-loop tca-mir-9b

Accession

MI0008935

Description

Tribolium castaneum tca-mir-9b precursor miRNA

Literature search

4 open access papers mention tca-mir-9b
(8 sentences)

Sequence

8516 reads, 136.0 reads per million, 34 experiments

uugacgaccguaaguuucuuuguuuuugguuccaacaggugggggccgauuuuguuaCUUUGGUAAUUUAGCGUUUGUGAuuuuauuugagucAUAAAGCUAGAUUACCAAAGCAaugcgguuggcauugcgucguggagauuggaguuggaauaagaagacguucauu
..(((........))).....((((((.((((((((.(((....)))...........((((((((((((((.((((((((((.....))))))))))))))))))))))))(((((((.....)))))))(((.....)))....))))))))..)))))).......

Structure

uugacgaccguaaguuucuuu      -g        ------------aggugggggccgauuuuguuaC              G          u 
                     guuuuu  guuccaac                                  UUUGGUAAUUUAGC UUUGUGAuuu a
                     ||||||  ||||||||                                  |||||||||||||| |||||||||| u
                     cagaag  uaagguug                                  AAACCAUUAGAUCG AAAUAcugag u
--------------uuacuug      aa        agguuagaggugcugcguuacgguuggcguaACG              -          u 

Annotation confidence High

Genome context

ref|NW_015451510.1|: 113100-113268 [-]

Mature tca-miR-9b-5p

• Accession: MIMAT0019134
• Description: Tribolium castaneum tca-miR-9b-5p mature miRNA
• Sequence: 58 - CUUUGGUAAUUUAGCGUUUGUGA - 80
• Evidence: experimental ; SOLID [2]

Mature tca-miR-9b-3p

• Accession: MIMAT0019135
• Description: Tribolium castaneum tca-miR-9b-3p mature miRNA
• Sequence: 94 - AUAAAGCUAGAUUACCAAAGCA - 115
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18571123
   Genome-wide mapping of conserved microRNAs and their host transcripts in Tribolium castaneum
   "Luo Q, Zhou Q, Yu X, Lin H, Hu S, Yu J"
   "J Genet Genomics (2008) 35:349-355


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696