Stem-loop tca-mir-3824

Accession

MI0016284

Description

Tribolium castaneum tca-mir-3824 precursor miRNA

Sequence

auggacaaagacugauacgcggUGUAAAAUUGGUUCGACUAUUUgugaacuaaauaaAUGGUUGAGUCAGUUUUGCACCguauaucaguuaaugaca
.....((..((((((((.((((((((((((((((((((((((((((.......)))))))))))))))))))))))))))).))))))))..))...

Structure

augga  aa        c                            ga 
     ca  gacugaua gcggUGUAAAAUUGGUUCGACUAUUUgu  a
     ||  |||||||| ||||||||||||||||||||||||||||  c
     gu  uugacuau ugCCACGUUUUGACUGAGUUGGUAaaua  u
--aca  aa        a                            aa 

Annotation confidence Not enough data

Genome context

ChLGX: 5781786-5781882 [-]

Clustered miRNAs

28 other miRNAs are < 10 kb from tca-mir-3824

Mature tca-miR-3824-5p

• Accession: MIMAT0018674
• Description: Tribolium castaneum tca-miR-3824-5p mature miRNA
• Sequence: 23 - UGUAAAAUUGGUUCGACUAUUU - 44
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3824-3p

• Accession: MIMAT0018675
• Description: Tribolium castaneum tca-miR-3824-3p mature miRNA
• Sequence: 58 - AUGGUUGAGUCAGUUUUGCACC - 79
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696