Stem-loop tca-mir-6012

Accession

MI0020223

Description

Tribolium castaneum tca-mir-6012 precursor miRNA

Literature search

1 open access papers mention tca-mir-6012
(2 sentences)

Sequence

3817 reads, 79.0 reads per million, 25 experiments

cgauugugacugggucacguagaggaaggaaagacaaucugguggugugcagggugaacAGACUGAUCUUGUUUCUGCGGAAAUguuaguuacagucauUUCGGCGAUGAGAUCAGCCUGUcgaacccagcucgaguucguucaacacuuucuucucuaguaauaugcagcgc
.....(((.(((.((.((.((((((..((((((......(((...((.((.((((..((((.(((((((((((...((.((((((...........)))))).))))))))))))).))))...)))).)).))...))).......))))))))))))))...)).))))))

Structure

cgauu   a   g  --c  g      aa      -acaauc   ugg  u  a    -ga    A           UCU  G      uuag 
     gug cug gu   ac uagagg  ggaaag       ugg   ug gc gggu   acAG CUGAUCUUGUU   GC GAAAUg    u
     ||| ||| ||   || ||||||  ||||||       |||   || || ||||   |||| |||||||||||   || ||||||    u
     cgc gac ua   ug aucucu  ucuuuc       gcu   gc cg ccca   UGUC GACUAGAGUAG   CG CUUuac    a
-----   -   g  uaa  -      --      acaacuu   uga  u  a    agc    C           ---  G      ugac 

Annotation confidence High

Genome context

ref|NC_007418.3|: 7388585-7388757 [-]

Mature tca-miR-6012-5p

• Accession: MIMAT0023565
• Description: Tribolium castaneum tca-miR-6012-5p mature miRNA
• Sequence: 60 - AGACUGAUCUUGUUUCUGCGGAAAU - 84
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6012-3p

• Accession: MIMAT0023566
• Description: Tribolium castaneum tca-miR-6012-3p mature miRNA
• Sequence: 100 - UUCGGCGAUGAGAUCAGCCUGU - 121
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323