miRBase entry: tca-mir-3898

Stem-loop tca-mir-3898


Accession
MI0016398
Description
Tribolium castaneum tca-mir-3898 precursor miRNA


Sequence

gaccuugcgauuGCUGUACCGGCUCAUAGCAuguuuaauuaucugcgcgcuauugauggagaaguuguaauUAUGAACCGGGAUGUUACUUgcaugcag
.....((((..(((.(((((((.((((((((..(((..(((((...........))))).)))..)))...))))).)))).....)))..))))))).

Structure
gaccu    au   -U   -----    C     ---   ug   aa     ugcg 
     ugcg  uGC  GUA     CCGG UCAUA   GCA  uuu  uuauc    c
     ||||  |||  |||     |||| |||||   |||  |||  |||||    g
     acgu  acg  CAU     GGCC AGUAU   ugu  aag  gguag    c
----g    --   UU   UGUAG    A     uaa   ug   -a     uuau 


Annotation confidence Not enough data
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Genome context
ChLG2: 4106423-4106521 [+]

Database links

Mature tca-miR-3898-5p

Accession MIMAT0018900
Description Tribolium castaneum tca-miR-3898-5p mature miRNA
Sequence 13 - GCUGUACCGGCUCAUAGCA - 31
Evidence experimental
SOLID [1]

Mature tca-miR-3898-3p

Accession MIMAT0018901
Description Tribolium castaneum tca-miR-3898-3p mature miRNA
Sequence 72 - UAUGAACCGGGAUGUUACUU - 91
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696