Stem-loop tca-bantam

Accession

MI0010584

Description

Tribolium castaneum tca-bantam precursor miRNA

Literature search

6 open access papers mention tca-bantam
(19 sentences)

Sequence

3262101 reads, 26615.0 reads per million, 34 experiments

ucagcgagacgaaaCUGGUUUUCACAGUGAUUUGACAGauauauuugauucUGAGAUCAUUGUGAAAGCUGAUUuuguuca
.......(((((((.((((((((((((((((((..((((..........)))))))))))))))))))))).)))))))..

Structure

ucagcga       C                  GA    uaua 
       gacgaaa UGGUUUUCACAGUGAUUU  CAGa    u
       ||||||| ||||||||||||||||||  ||||     
       uuguuUU GUCGAAAGUGUUACUAGA  GUcu    u
-----ac       A                  --    uagu 

Annotation confidence High

Genome context

ref|NC_007418.3|: 16990352-16990432 [+]

Mature tca-bantam-5p

• Accession: MIMAT0019178
• Description: Tribolium castaneum tca-bantam-5p mature miRNA
• Sequence: 15 - CUGGUUUUCACAGUGAUUUGACAG - 38
• Evidence: experimental ; SOLID [1]

Mature tca-bantam-3p

• Accession: MIMAT0010091
• Description: Tribolium castaneum tca-bantam-3p mature miRNA
• Sequence: 52 - UGAGAUCAUUGUGAAAGCUGAUU - 74
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696