Stem-loop tca-mir-3851a-2

Accession

MI0016330

Description

Tribolium castaneum tca-mir-3851a-2 precursor miRNA

Literature search

1 open access papers mention tca-mir-3851a-2
(1 sentences)

Sequence

26339 reads, 2037.0 reads per million, 34 experiments

cggacgaauuaugaauuuggcgcugAGUUGAUUUGGAGUAGUACUAUGguuuuggguacucacaUAGUACAUUCCGAAUCGACUCGUuaacaaauuuaaauucaacaa
.....(((((.((((((((..(.((((((((((((((((.((((((((..............)))))))))))))))))))))))).)..))))))))))))).....

Structure

cggac     a        gc c                A        guuuug 
     gaauu ugaauuug  g ugAGUUGAUUUGGAGU GUACUAUG      g
     ||||| ||||||||  | |||||||||||||||| ||||||||       
     cuuaa auuuaaac  u GCUCAGCUAAGCCUUA CAUGAUac      g
aacaa     -        aa U                -        acucau 

Annotation confidence High

Genome context

ref|NC_007420.3|: 48564-48671 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tca-mir-3851a-2

Mature tca-miR-3851a-5p

• Accession: MIMAT0018758
• Description: Tribolium castaneum tca-miR-3851a-5p mature miRNA
• Sequence: 26 - AGUUGAUUUGGAGUAGUACUAUG - 48
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3851a-3p

• Accession: MIMAT0018759
• Description: Tribolium castaneum tca-miR-3851a-3p mature miRNA
• Sequence: 65 - UAGUACAUUCCGAAUCGACUCGU - 87
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696