Stem-loop tca-mir-263b

Accession

MI0008920

Description

Tribolium castaneum tca-mir-263b precursor miRNA

Literature search

1 open access papers mention tca-mir-263b
(1 sentences)

Sequence

601315 reads, 3875.0 reads per million, 34 experiments

cuuacgaacCUUGGCACUGGAAGAAUUCACAGAuuguauuugaaucGUGAUUCUUUUAAUGCCAUAuuucguggg
((((((((...(((((.(((((((((.(((.((((.......)))))))))))))))).)))))...))))))))

Structure

        cCU     C         U   A    gu 
cuuacgaa   UGGCA UGGAAGAAU CAC GAuu  a
||||||||   ||||| ||||||||| ||| ||||  u
gggugcuu   ACCGU AUUUUCUUA GUG cuaa  u
        uAU     A         -   -    gu 

Annotation confidence Medium

Genome context

ref|NC_007418.3|: 4855278-4855352 [+]

Mature tca-miR-263b-5p

• Accession: MIMAT0008378
• Description: Tribolium castaneum tca-miR-263b-5p mature miRNA
• Sequence: 10 - CUUGGCACUGGAAGAAUUCACAGA - 33
• Evidence: experimental ; SOLID [2]

Mature tca-miR-263b-3p

• Accession: MIMAT0019122
• Description: Tribolium castaneum tca-miR-263b-3p mature miRNA
• Sequence: 47 - GUGAUUCUUUUAAUGCCAUA - 66
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696