Stem-loop tca-mir-9c

Accession

MI0016304

Description

Tribolium castaneum tca-mir-9c precursor miRNA

Literature search

3 open access papers mention tca-mir-9c
(5 sentences)

Sequence

78071 reads, 1318.0 reads per million, 34 experiments

ugauuuugcuaacgcguuaucacuUCUUUGGUGAUCUAGCCGUGUGAauuauuuuugaaaucACGCGUCUAAGUCGCCAAGAUUUGaugaugugucuaacaacugga
.....(((.(((((((((((((..((((.((((((.(((.(((((((.(((....)))..))))))).))).))))))))))..))))))))))).)).))).....

Structure

ugauu   c  -           cu    U      C   C       -a   u 
     uug ua acgcguuauca  UCUU GGUGAU UAG CGUGUGA  uua u
     ||| || |||||||||||  |||| |||||| ||| |||||||  |||  
     aac au uguguaguaGU  AGAA CCGCUG AUC GCGCAcu  agu u
agguc   a  c           UU    -      A   U       aa   u 

Annotation confidence High

Genome context

ref|NC_007418.3|: 15689793-15689899 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-9c

Mature tca-miR-9c-5p

• Accession: MIMAT0018714
• Description: Tribolium castaneum tca-miR-9c-5p mature miRNA
• Sequence: 25 - UCUUUGGUGAUCUAGCCGUGUGA - 47
• Evidence: experimental ; SOLID [1]

Mature tca-miR-9c-3p

• Accession: MIMAT0018715
• Description: Tribolium castaneum tca-miR-9c-3p mature miRNA
• Sequence: 63 - ACGCGUCUAAGUCGCCAAGAUUUG - 86
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696