Stem-loop tca-mir-87b

Accession

MI0016332

Description

Tribolium castaneum tca-mir-87b precursor miRNA

Sequence

186303 reads, 1799.0 reads per million, 34 experiments

cgggggaugccugccgucgacACGCUUGAACUUUGUUUUUCCUgugcauuauucuagGUGAGCAAAGAUUCAGGUGUGUugacuaacucucucaucag
.((.((....)).))(((((((((((((((((((((((..((((..........)))).)))))))).)))))))))))))))...............

Structure

cgggggaugccugcc               -        UU    ugca 
               gucgacACGCUUGAA CUUUGUUU  CCUg    u
               ||||||||||||||| ||||||||  ||||     
               caguUGUGUGGACUU GAAACGAG  Ggau    u
gacuacucucucaau               A        -U    cuua 

Annotation confidence High

Genome context

ref|NC_007421.3|: 1502194-1502291 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-87b

Mature tca-miR-87b-5p

• Accession: MIMAT0018768
• Description: Tribolium castaneum tca-miR-87b-5p mature miRNA
• Sequence: 22 - ACGCUUGAACUUUGUUUUUCCU - 43
• Evidence: experimental ; SOLID [1]

Mature tca-miR-87b-3p

• Accession: MIMAT0018769
• Description: Tribolium castaneum tca-miR-87b-3p mature miRNA
• Sequence: 58 - GUGAGCAAAGAUUCAGGUGUGU - 79
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696