Stem-loop tca-mir-2788

Accession

MI0016347

Description

Tribolium castaneum tca-mir-2788 precursor miRNA

Sequence

9229 reads, 116.0 reads per million, 28 experiments

gacauuuguuuaugcaauuuUGGGGUUUCUUAGCGGCAUUUGccucaaauuacacugCAAUGCCCUUGGAAAUCCCAAACaugcaugacgacucaa
((...(((((.(((((..((((((((((((.((.((((((.((.............)))))))))).))))))))))))..)))))))))).))..

Structure

--  cau     u     au            U  C      U  cucaa 
  ga   uuguu augca  uuUGGGGUUUCU AG GGCAUU Gc     a
  ||   ||||| |||||  |||||||||||| || |||||| ||     u
  cu   agcag uacgu  AAACCCUAAAGG UC CCGUAA Cg     u
aa  --c     -     aC            U  -      -  ucaca 

Annotation confidence High

Genome context

ref|NC_007423.3|: 5228613-5228708 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-2788

Mature tca-miR-2788-5p

• Accession: MIMAT0018798
• Description: Tribolium castaneum tca-miR-2788-5p mature miRNA
• Sequence: 21 - UGGGGUUUCUUAGCGGCAUUUG - 42
• Evidence: experimental ; SOLID [1]

Mature tca-miR-2788-3p

• Accession: MIMAT0018799
• Description: Tribolium castaneum tca-miR-2788-3p mature miRNA
• Sequence: 58 - CAAUGCCCUUGGAAAUCCCAAAC - 80
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696