Stem-loop tca-mir-6011

Accession

MI0020222

Description

Tribolium castaneum tca-mir-6011 precursor miRNA

Sequence

cgaguccuCGAUGAUGUAAGCGGAACCguccggguuguagacgaucuugccgGAGAACUGCUCCACGUCCGaggugu
.....(((((..(((((.(((((..(((.(.((((((....)))))).).)))....)))))..))))))))))...

Structure

cgagu     AU     -A     --AA   u c      u 
     ccuCG  GAUGU  AGCGG    CCg c ggguug a
     |||||  |||||  |||||    ||| | ||||||  
     ggaGC  CUGCA  UCGUC    Ggc g ucuagc g
--ugu     --     CC     AAGA   c u      a 

Annotation confidence Low

Genome context

ChLG3: 24880461-24880537 [-]

Mature tca-miR-6011-5p

• Accession: MIMAT0023563
• Description: Tribolium castaneum tca-miR-6011-5p mature miRNA
• Sequence: 9 - CGAUGAUGUAAGCGGAACC - 27
• Evidence: experimental ; SOLiD [1]

Mature tca-miR-6011-3p

• Accession: MIMAT0023564
• Description: Tribolium castaneum tca-miR-6011-3p mature miRNA
• Sequence: 53 - GAGAACUGCUCCACGUCCG - 71
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696


2. PubMed ID: 22171334
   Detection of microRNAs in color space
   "Marco A, Griffiths-Jones S"
   "Bioinformatics (2012) 28:318-323