miRBase entry: tca-mir-6007

Stem-loop tca-mir-6007

Accession

MI0020218

Description

Tribolium castaneum tca-mir-6007 precursor miRNA

Sequence

auuggucuuaugguaCAAAGACGUUAGAAACAGGacuacgaaauuaauuaugGUUCUGUCUCUUUCGUUUUGCAucaugggaacaua
..((.(((((((((.(((.((((..(((.(((((((((.((......)).))))))))).)))..))))))).))))))))).))..

Structure

au  g         a   A    UU   A         c  aa 
  ug ucuuauggu CAA GACG  AGA ACAGGacua ga  u
  || ||||||||| ||| ||||  ||| ||||||||| ||   
  ac aggguacuA GUU UUGC  UCU UGUCUUGgu uu  u
au  a         C   -    UU   C         a  aa

Annotation confidence Not enough data

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Genome context

ChLGX: 5790992-5791078 [-]

Clustered miRNAs

36 other miRNAs are < 10 kb from tca-mir-6007

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-6007-5p

Accession	MIMAT0023555
Description	Tribolium castaneum tca-miR-6007-5p mature miRNA
Sequence	16 - CAAAGACGUUAGAAACAGG - 34
Evidence	experimental SOLiD [1]

Mature tca-miR-6007-3p

Accession	MIMAT0023556
Description	Tribolium castaneum tca-miR-6007-3p mature miRNA
Sequence	53 - GUUCUGUCUCUUUCGUUUUGCA - 74
Evidence	experimental SOLiD [1]

References

PubMed ID: 20817720
Functional shifts in insect microRNA evolution
"Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
"Genome Biol Evol (2010) 2:686-696

PubMed ID: 22171334
Detection of microRNAs in color space
"Marco A, Griffiths-Jones S"
"Bioinformatics (2012) 28:318-323