Stem-loop tca-mir-92c

Accession

MI0016341

Description

Tribolium castaneum tca-mir-92c precursor miRNA

Literature search

1 open access papers mention tca-mir-92c
(6 sentences)

Sequence

261249 reads, 8242.0 reads per million, 34 experiments

uuuacuuaacauuuucgaggauggaacggucgguuGGGUCGUGAUUUGUGCAAAUAUGuuauuucguucaUAUUGCACCAGUCCCGGCCUGAcugcucuuccaggaccacgccgggguguuggaggga
.........(((((....)))))....((.(((((((((((.((((.((((((.((((..........)))))))))).)))).)))))))))))))(((((((.(((.(....)))).)))))))..

Structure

----uuuacuuaacauuuucgaggauggaac  u           U    U      A    uuau 
                               gg cgguuGGGUCG GAUU GUGCAA UAUG    u
                               || ||||||||||| |||| |||||| ||||     
                               uc gucAGUCCGGC CUGA CACGUU AUac    u
agggagguuguggggccgcaccaggaccuuc  -           C    C      -    uugc 

Annotation confidence High

Genome context

ref|NC_007422.5|: 1817521-1817648 [+]

Mature tca-miR-92c-5p

• Accession: MIMAT0018786
• Description: Tribolium castaneum tca-miR-92c-5p mature miRNA
• Sequence: 36 - GGGUCGUGAUUUGUGCAAAUAUG - 58
• Evidence: experimental ; SOLID [1]

Mature tca-miR-92c-3p

• Accession: MIMAT0018787
• Description: Tribolium castaneum tca-miR-92c-3p mature miRNA
• Sequence: 71 - UAUUGCACCAGUCCCGGCCUGA - 92
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696