Stem-loop tca-mir-3902

Accession

MI0016402

Description

Tribolium castaneum tca-mir-3902 precursor miRNA

Sequence

54 reads, 331.0 reads per million, 4 experiments

ccgucauauaaccgugguuAUAUAACCGGCAUAUUACcaugguuauauaaccagcauauaaccaugguuAUAUAAUCGGCAUAUAACCaugguuauauaaccg
..((.((((((((((((((((((..((((.((((.(((((((((((((.......))))))))))))).))))..)))).)))))))))))))))))).))..

Structure

cc  c                  AA    -C    U             aa 
  gu auauaaccgugguuAUAU  CCGG  AUAU ACcaugguuauau  c
  || ||||||||||||||||||  ||||  |||| |||||||||||||  c
  ca uauauugguaCCAAUAUA  GGCU  UAUA ugguaccaauaua  a
gc  a                  -C    AA    u             cg 

Annotation confidence Not enough data

Genome context

ref|NC_007425.3|: 3118243-3118345 [+]

Mature tca-miR-3902-5p

• Accession: MIMAT0018908
• Description: Tribolium castaneum tca-miR-3902-5p mature miRNA
• Sequence: 20 - AUAUAACCGGCAUAUUAC - 37
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3902-3p

• Accession: MIMAT0018909
• Description: Tribolium castaneum tca-miR-3902-3p mature miRNA
• Sequence: 70 - AUAUAAUCGGCAUAUAACC - 88
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696