Stem-loop tca-mir-33

Accession

MI0008905

Description

Tribolium castaneum tca-mir-33 precursor miRNA

Literature search

2 open access papers mention tca-mir-33
(3 sentences)

Sequence

1012 reads, 24.0 reads per million, 31 experiments

agaagaugaauauuaugaucuuagGUGCAUUGUAGUUGCAUUGCAuguuauucaaagugCAGUGUCUCUCCAGUGCAACUuagcgcauaauuucacaccucu
......((((.((((((..((.((.(((((((.((..(((((((((..........)))))))))..)).))))))).)).))..)))))))))).......

Structure

-agaaga    u      au  u  G       U  UU         guua 
       ugaa auuaug  cu ag UGCAUUG AG  GCAUUGCAu    u
       |||| ||||||  || || ||||||| ||  |||||||||     
       acuu uaauac  ga UC ACGUGAC UC  UGUGACgug    u
ucuccac    -      gc  u  A       C  UC         aaac 

Annotation confidence High

Genome context

ref|NC_007419.2|: 8315277-8315378 [-]

Mature tca-miR-33-5p

• Accession: MIMAT0008363
• Description: Tribolium castaneum tca-miR-33-5p mature miRNA
• Sequence: 25 - GUGCAUUGUAGUUGCAUUGCA - 45
• Evidence: experimental ; SOLID [2]

Mature tca-miR-33-3p

• Accession: MIMAT0019107
• Description: Tribolium castaneum tca-miR-33-3p mature miRNA
• Sequence: 60 - CAGUGUCUCUCCAGUGCAACU - 80
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696