Stem-loop tca-mir-277

Accession

MI0008923

Description

Tribolium castaneum tca-mir-277 precursor miRNA

Literature search

1 open access papers mention tca-mir-277
(1 sentences)

Sequence

gugggcucCGUGCCAGAUGCGCGUUUACACugcaccguucuaaagaauucugUAAAUGCACUAUCUGGUACGACAgcccac
(((((((.(((((((((((.(((((((((.......((((....))))..))))))))).).))))))))))..)))))))

Structure

       -c          - C         Cugcacc    u 
gugggcu  CGUGCCAGAU G GCGUUUACA       guuc a
|||||||  |||||||||| | |||||||||       ||||  
cacccgA  GCAUGGUCUA C CGUAAAUgu       uaag a
       CA          U A         -----cu    a 

Annotation confidence Not enough data

Genome context

ChLG7: 13758830-13758910 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tca-mir-277

Mature tca-miR-277-3p

• Accession: MIMAT0008382
• Description: Tribolium castaneum tca-miR-277-3p mature miRNA
• Sequence: 53 - UAAAUGCACUAUCUGGUACGACA - 75
• Evidence: experimental ; SOLID [2]

Mature tca-miR-277-5p

• Accession: MIMAT0019124
• Description: Tribolium castaneum tca-miR-277-5p mature miRNA
• Sequence: 9 - CGUGCCAGAUGCGCGUUUACAC - 30
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696