Stem-loop tca-mir-307

Accession

MI0008929

Description

Tribolium castaneum tca-mir-307 precursor miRNA

Literature search

3 open access papers mention tca-mir-307
(4 sentences)

Sequence

45680 reads, 3288.0 reads per million, 28 experiments

ggugACUCACUCAACCUGGGUGUGauguguuugcuguaccaUCACAACCUCCUUGAGUGAGCGaccgg
(((..(((((((((...((.(((((((.((.......))))))))).))...)))))))))..)))..

Structure

--   gA         CCU  G       u  uu 
  ggu  CUCACUCAA   GG UGUGaug gu  g
  |||  |||||||||   || ||||||| ||  c
  cca  GAGUGAGUU   CC ACACUac ca  u
gg   GC         CCU  A       -  ug 

Annotation confidence High

Genome context

ref|NC_007423.3|: 13556466-13556533 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-307

Mature tca-miR-307-5p

• Accession: MIMAT0019129
• Description: Tribolium castaneum tca-miR-307-5p mature miRNA
• Sequence: 5 - ACUCACUCAACCUGGGUGUG - 24
• Evidence: experimental ; SOLID [2]

Mature tca-miR-307-3p

• Accession: MIMAT0008389
• Description: Tribolium castaneum tca-miR-307-3p mature miRNA
• Sequence: 42 - UCACAACCUCCUUGAGUGAGCG - 63
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696