Stem-loop tca-mir-3888

Accession

MI0016385

Description

Tribolium castaneum tca-mir-3888 precursor miRNA

Sequence

ggaaaauuucgcuGUGCUUUGAAUGUCACGCCgauaaaaauaauuuuuguauauugaauaaaugagauacgaaaaaauucaauuuccgCGUGACGUAGUUAAGGUUAgcgugaaguaucac
.....(((((((.((((((((((((((((((.((.........(((((((((.((........)).))))))))).........)).)))))))))..)))))))..))))))))).....

Structure

ggaaa       u  --       --         C  uaaaaauaa         a  gaa 
     auuucgc GU  GCUUUGA  AUGUCACGC ga         uuuuuguau uu   u
     ||||||| ||  |||||||  ||||||||| ||         ||||||||| ||    
     ugaagug cg  UGGAAUU  UGCAGUGCg cu         aaaagcaua ag   a
cacua       -  AU       GA         c  uuaacuuaa         g  uaa 

Annotation confidence Not enough data

Genome context

ChLG2: 11852628-11852748 [+]

Mature tca-miR-3888-5p

• Accession: MIMAT0018874
• Description: Tribolium castaneum tca-miR-3888-5p mature miRNA
• Sequence: 14 - GUGCUUUGAAUGUCACGCC - 32
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3888-3p

• Accession: MIMAT0018875
• Description: Tribolium castaneum tca-miR-3888-3p mature miRNA
• Sequence: 89 - CGUGACGUAGUUAAGGUUA - 107
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696