miRBase entry: tca-mir-3905

Stem-loop tca-mir-3905


Accession
MI0016405
Description
Tribolium castaneum tca-mir-3905 precursor miRNA


Sequence

uuaucggguucucaaacggcggaacuggcggGGAAGGGGGAGCCGCCUUGccuucggccgggccgcaccaaggcaagcagcacuuccaaaccccgaccagcguggcgaguuacucaccccucaa
.....((((.....(((.((.(..(((((((((..(((((.((.((.(((((((((((...))))....))))))))).)).)))))...))))).))))..).))..)))....)))).....

Structure
uuauc    ucuca   -g  g aa    -     -AA     A  C  C       ----    c 
     gggu     aac  gc g  cugg cggGG   GGGGG GC GC UUGccuu    cggc  
     ||||     |||  || |  |||| |||||   ||||| || || |||||||    |||| g
     ccca     uug  cg u  gacc gcccc   ccuuc cg cg aacggaa    gccg  
aacuc    -cuca   ag  g gc    a     aaa     a  a  -       ccac    g 


Annotation confidence Not enough data
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Genome context
ChLG9: 11233573-11233696 [-]

Database links

Mature tca-miR-3905-5p

Accession MIMAT0018913
Description Tribolium castaneum tca-miR-3905-5p mature miRNA
Sequence 32 - GGAAGGGGGAGCCGCCUUG - 50
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696