Stem-loop tca-mir-3827

Accession

MI0016288

Description

Tribolium castaneum tca-mir-3827 precursor miRNA

Sequence

8527 reads, 79.0 reads per million, 30 experiments

gcuucUCACUGCGCUGCUGCGGAUGCCGCAagauaaaaaaucuUCCGAUUUUCAUUUGUAGUUGCUUUGAAauuu
.....(((..(((..((((((((((.((.(((((.....))))).)).....)))))))))))))..))).....

Structure

gcuuc   CU   CU          ----C  C     a 
     UCA  GCG  GCUGCGGAUG     CG Aagau a
     |||  |||  ||||||||||     || ||||| a
     AGU  CGU  UGAUGUUUAC     GC Uucua a
uuuaA   UU   --          UUUUA  C     a 

Annotation confidence Medium

Genome context

ref|NC_007416.3|: 5640284-5640358 [-]

Mature tca-miR-3827-5p

• Accession: MIMAT0018682
• Description: Tribolium castaneum tca-miR-3827-5p mature miRNA
• Sequence: 6 - UCACUGCGCUGCUGCGGAUGCCGCA - 30
• Evidence: experimental ; SOLID [1]

Mature tca-miR-3827-3p

• Accession: MIMAT0018683
• Description: Tribolium castaneum tca-miR-3827-3p mature miRNA
• Sequence: 44 - UCCGAUUUUCAUUUGUAGUUGCUUUGAA - 71
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696